Stem-loop mtr-MIR2648

Accession

MI0011967

Description

Medicago truncatula mtr-MIR2648 precursor miRNA

Sequence

15480 reads, 96.0 reads per million, 111 experiments

cucuugguguauguuugaUAGCCAAUGGGAAUAACAGAUucacucugaauuaauucaaaagcuacauuacauuacauuucguagcuuuuacaaacugguuCUGUCAUCUCCAUUGUGUUAUCguacauagacuuggau
.(((.(((.(((((.((((((((((((((.((.(((((.(((...((((....))))((((((((...............)))))))).......))).))))).)).))))))).))))))).))))).))).))).

Structure

c   u   g     u       -       A  A     U   cucugaauuaauuca        auuaca 
 ucu ggu uaugu ugaUAGC CAAUGGG AU ACAGA uca               aaagcuac      u
 ||| ||| ||||| ||||||| ||||||| || ||||| |||               ||||||||      u
 agg uca auaca gCUAUUG GUUACCU UA UGUCu ggu               uuucgaug      a
u   u   g     u       U       C  C     u   --------caaacau        cuuuac 

Annotation confidence High

Genome context

chr5: 37785921-37786058 [-]

Mature mtr-miR2648-5p

• Accession: MIMAT0013420
• Description: Medicago truncatula mtr-miR2648-5p mature miRNA
• Sequence: 19 - UAGCCAAUGGGAAUAACAGAU - 39
• Evidence: experimental ; 454 [1]

Mature mtr-miR2648-3p

• Accession: MIMAT0054932
• Description: Medicago truncatula mtr-miR2648-3p mature miRNA
• Sequence: 101 - CUGUCAUCUCCAUUGUGUUAUC - 122
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796