Stem-loop mtr-MIR2650

Accession

MI0011969

Description

Medicago truncatula mtr-MIR2650 precursor miRNA

Sequence

agucucaauuauuucaAACUUAAAUAUGUUUUCAGUCCcuacauuuugcgugacuuuaaagaauaaucuuuauauuuuagggauuuuaaaaacauuuauugaaauguaaggacuauuuuuaaaagucacgcaaaaugucggaacgaaaaacauauuuaaccuuaaaauauuuggaacc
.((.((((.(((((.((..(((((((((((((..((.((.(((((((((((((((((.(((((((.((((((((((((((..................)))))))))))))).))))))).))))))))))))))))).)).))..)))))))))))))..)).))))).)))).)).

Structure

a  c    u     c  AC             CA  C  u                 a       a              ggauuuua 
 gu ucaa uauuu aA  UUAAAUAUGUUUU  GU Cc acauuuugcgugacuuu aagaaua ucuuuauauuuuag        a
 || |||| ||||| ||  |||||||||||||  || || ||||||||||||||||| ||||||| ||||||||||||||         
 ca gguu auaaa uu  aauuuauacaaaa  ca gg uguaaaacgcacugaaa uuuuuau aggaauguaaaguu        a
c  a    u     a  cc             ag  a  c                 a       c              auuuacaa 

Annotation confidence Not enough data

Genome context

chr5: 3163401-3163578 [+]

Mature mtr-miR2650

• Accession: MIMAT0013422
• Description: Medicago truncatula mtr-miR2650 mature miRNA
• Sequence: 17 - AACUUAAAUAUGUUUUCAGUCC - 38
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796