miRBase entry: mtr-MIR2652b

Stem-loop mtr-MIR2652b


Accession
MI0011972
Description
Medicago truncatula mtr-MIR2652b precursor miRNA


Sequence

50980 reads, 502.0 reads per million, 111 experiments
gcGGUUAUGGUGCAUAAGGAAAUCuuuaugcacccugcauaaauccagaaaugguuuuggaguacaacucacagaaaccauuuccacaucaaaaugauuuuggcauaauugggcugggauuuaugcagagugcuggaaaccauuaaguacaucuaaugauuuuguaguacgacucacaaaaaccauuuuugaauuUAUGCAGGGUGCAUAAGGAUUuccuuaugcaccauaaccg
.(((((((((((((((((((((((((((((((((((((((((((.((((((((((((((((((...(((.((((((....(((((((((......(((((((((........)))))))))........))).)))))).(((((........))))).)))))))))...)))).).))))))))))))).)))))))))))))))))))))))))))))))))))))))))))

Structure
g                                           c             - -    aca   c      ----------------acca      -   --caaaau         aua 
 cGGUUAUGGUGCAUAAGGAAAUCuuuaugcacccugcauaaau cagaaaugguuuu g gagu   acu acagaa                    uuucca cau        gauuuuggc   a
 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||   ||| ||||||                    |||||| |||        |||||||||    
 gccaauaccacguauuccuUUAGGAAUACGUGGGACGUAUuua guuuuuaccaaaa c cuca   uga uguuuu                    aaaggu gug        uuagggucg   u
-                                           a             a a    gca   -      aguaaucuacaugaauuacc      c   agacguau         ggu 


Annotation confidence Low
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Genome context
chr1: 10180420-10180654 [-]

Database links

Mature mtr-miR2652b-5p

Accession MIMAT0054937
Description Medicago truncatula mtr-miR2652b-5p mature miRNA
Sequence 3 - GGUUAUGGUGCAUAAGGAAAUC - 24
Evidence experimental
unknown

Mature mtr-miR2652b-3p

Accession MIMAT0013425
Description Medicago truncatula mtr-miR2652b-3p mature miRNA
Sequence 196 - UAUGCAGGGUGCAUAAGGAUU - 216
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796