miRBase entry: mtr-MIR2652g

Stem-loop mtr-MIR2652g


Accession
MI0011977
Description
Medicago truncatula mtr-MIR2652g precursor miRNA


Sequence

14961 reads, 149.0 reads per million, 111 experiments
ugguuacggugcauaaggaaauucuuauGCACCCUGCAUAAAUCCAGAAAUgauuucugugagcuguacuccaaaaccauuagauguaauuaaugguuuccagcacucugcauaaauuccagcccaauuaugcuaaaaccauuuugcuauggaaaugguuucugugaguuauacuccaaaaccauuucuaaauuUAUGCAGGGUGCAUAAGGAUUuucuuaugcaccauaaccg
.(((((.((((((((((((((((((((((((((((((((((((..(((((((.(((.((.(((.((((((((((((((((((........)))))))))..........((((((............))))))..((((((((((......)))))))))).)).))).)))))))))))).)))))))..)))))))))))))))))))))))))))))))))))).))))).

Structure
u     c                                    CC       a   c  u   c    -   -  aaaccauuagauguaauuaaugguuuccagcacucugcauaaauuccagcccaauuaugcua          gc 
 gguua ggugcauaaggaaauucuuauGCACCCUGCAUAAAU  AGAAAUg uuu ug gag ugua cuc ca                                                              aaaccauuuu  u
 ||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||| || ||| |||| ||| ||                                                              ||||||||||   
 ccaau ccacguauucuuUUAGGAAUACGUGGGACGUAUuua  ucuuuac aaa ac cuc auau gag gu                                                              uuugguaaag  a
g     a                                    aa       c   -  -   -    u   u  -------------------------------------------------------------c          gu 


Annotation confidence Low
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Genome context
chr5: 38127389-38127622 [+]

Database links

Mature mtr-miR2652g-5p

Accession MIMAT0054942
Description Medicago truncatula mtr-miR2652g-5p mature miRNA
Sequence 29 - GCACCCUGCAUAAAUCCAGAAAU - 51
Evidence experimental
unknown

Mature mtr-miR2652g-3p

Accession MIMAT0013430
Description Medicago truncatula mtr-miR2652g-3p mature miRNA
Sequence 195 - UAUGCAGGGUGCAUAAGGAUU - 215
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796