Stem-loop mtr-MIR2652j

Accession

MI0011980

Description

Medicago truncatula mtr-MIR2652j precursor miRNA

Sequence

agcaugguuuuuuuuguugagaaaauccuuaugcacucugcauaaauccagaaaugguuuuggaguacaauucagaaaccauuuccacagcaaaaugguuuugauauaauuuuaugcagggugcuguaaacuauuaaguacaucuaaugauuuugaaauacaacucacaaaaaucauuucuggauuUAUGCAGGGUGCAUAAGGAUUuccuuaugcaaaaccgcgc
.((.((((((....(((((((.((((((((((((((((((((((((((((((((((((((((((((....((((((((((((((........))))))))))............(((((....))))).(((....)))..(((....)))..)))).....)))).).))))))))))))))))))))))))))))))))))))))).)))).))))))))).))

Structure

a  a      uuuu   -    a                                       - -    -acaa    ---------------------------------------------------          cca 
 gc ugguuu    ugu ugag aaauccuuaugcacucugcauaaauccagaaaugguuuu g gagu     uuca                                                   gaaaccauuu   c
 || ||||||    ||| |||| ||||||||||||||||||||||||||||||||||||||| | ||||     ||||                                                   ||||||||||    
 cg gccaaa    acg auuc uUUAGGAAUACGUGGGACGUAUuuaggucuuuacuaaaa c cuca     aagu                                                   uuuugguaaa   a
-  c      ----   u    c                                       a a    acaua    uuuaguaaucuacaugaauuaucaaaugucgugggacguauuuuaauauag          acg 

Annotation confidence Not enough data

Genome context

chr8: 17937327-17937552 [-]

Mature mtr-miR2652j

• Accession: MIMAT0013433
• Description: Medicago truncatula mtr-miR2652j mature miRNA
• Sequence: 187 - UAUGCAGGGUGCAUAAGGAUU - 207
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796