Accession
MI0011983
Description
Medicago truncatula
mtr-MIR2653a precursor miRNA
Sequence
7767
reads,
66.0
reads per million, 111 experiments
cgacaacccucuuccaaaucaCGCUGCUGUGAACAUGAUUGAGguauaugaggaagcucccggacuugacguccguaauguuacaacuccucuggugccacuacacaucaaguuaugccaagccucucuguuugaccaugaucaugccaauugccaagaaugauucuguaauccuuuggguugcugcguuguuuaaaaugacauccagagcuugaugaacaacAAUUAUUUGACUGUCAGCGAcgucugugugauugugccagucu
.....................((((((.((.((.(((((((.(((((..((((((((...(((((.....)))))....))).....)))))..)))))......(((((((((....(((((......)))))..((.((((((..............)))))).))((((((...))))))(((.(.((((......)))).))))))))))))).....))))))))).)).).)))))..(.(((.((......))))).).
.....................((((((.((.((.(((((((.(((((..((((((((...(((((.....)))))....))).....)))))..)))))......(((((((((....(((((......)))))..((.((((((..............)))))).))((((((...))))))(((.(.((((......)))).))))))))))))).....))))))))).)).).)))))..(.(((.((......))))).).
Structure
---cgacaacccucuuccaaauca - U G C --------------------------------------------------------------------------------------------------------------------------A au ----- -ucc u
CGCUG C GU AA AUGAUUG Gguau gagga agc cggac u
||||| | || || ||||||| ||||| ||||| ||| ||||| g
GCGAC G CA UU UAUUAAc ccgug cuccu uug gccug a
ucugaccguguuagugugucugcA U U G - aacaaguaguucgagaccuacaguaaaauuuguugcgucguuggguuuccuaaugucuuaguaagaaccguuaaccguacuaguaccaguuugucucuccgaaccguauugaacuacacauca gu caaca uaau c
Annotation confidence
Low
Do you think this miRNA is real?
Genome context
chr6: 6968353-6968618 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2653a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature mtr-miR2653a-5p
| Accession | MIMAT0013436 |
| Description | Medicago truncatula mtr-miR2653a-5p mature miRNA |
| Sequence | 22 - CGCUGCUGUGAACAUGAUUGAG - 43 |
| Evidence |
experimental
454 [1] |
Mature mtr-miR2653a-3p
| Accession | MIMAT0054948 |
| Description | Medicago truncatula mtr-miR2653a-3p mature miRNA |
| Sequence | 224 - AAUUAUUUGACUGUCAGCGA - 243 |
| Evidence |
experimental
unknown |
References
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