miRBase entry: mtr-MIR2655a

Stem-loop mtr-MIR2655a


Accession
MI0011987
Description
Medicago truncatula mtr-MIR2655a precursor miRNA


Sequence

30144 reads, 268.0 reads per million, 111 experiments
cccauaaguaauaaaaggucCGUUUAGGUCCCUUAACUUUAuuuaaaguaucgguuugguccuuucuguuaauuuaauucaaaaaaacguuaaguuuagggaccaaacuaauacuaauuaaauaaguuaagggaccaaacuaauacuaauuaaauaaguuaagggaccaaaauuuaacguuuuuuugaauuaaauuaacagaagggaccaaaccguuacuuuaAAUAAAGUUAAGGGACCUAAACGaacuuuuuuuuauuuaaggga
(((.(((((((.(((((((.((((((((((((((((((((((((((((((.((((((((((((((((((((((((((((((((((((((((((((((.((..((.((((.....((((((....((((.........)))).....))))))....))))..))..)).)))))))))))))))))))))))))))))))))))))))))))))).)))))))))))))))))))))))))))))).))))))).))))))).))).

Structure
-   a       u       c                              u                                              a  ga  -a    aauac      -aaua    aag 
 ccc uaaguaa aaaaggu CGUUUAGGUCCCUUAACUUUAuuuaaagua cgguuugguccuuucuguuaauuuaauucaaaaaaacguuaaguuu gg  cc  aacu     uaauua     aguu   g
 ||| ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||  ||  ||||     ||||||     ||||   g
 ggg auuuauu uuuuuca GCAAAUCCAGGGAAUUGAAAUAAauuucau gccaaaccagggaagacaauuaaauuaaguuuuuuugcaauuuaaa cc  gg  uuga     auuaau     ucaa   a
a   a       u       a                              u                                              a  ag  aa    -auaa      cauaa    acc 


Annotation confidence Low
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Genome context
chr3: 40642836-40643102 [+]

Database links

Mature mtr-miR2655a-5p

Accession MIMAT0013440
Description Medicago truncatula mtr-miR2655a-5p mature miRNA
Sequence 21 - CGUUUAGGUCCCUUAACUUUA - 41
Evidence experimental
454 [1]

Mature mtr-miR2655a-3p

Accession MIMAT0054952
Description Medicago truncatula mtr-miR2655a-3p mature miRNA
Sequence 224 - AAUAAAGUUAAGGGACCUAAACG - 246
Evidence experimental
unknown

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796