Stem-loop mtr-MIR2655c

Accession

MI0011989

Description

Medicago truncatula mtr-MIR2655c precursor miRNA

Sequence

cccuuaaguaauaaaaggucCGUUUAGGUCCCUUAACUUUAuuuaaaguaucaguuugauccuuucugauaauuuaauuaaaaaaacauuaaguuuagggaccaaacuaauauuaauuaaauaaguuaagggagaaaacuaauaccaauuaaauaagauaagagaccaaaauuuaacuuuuauuugaauuaaauuaauagaaaggaccaaaccgacacuuucacuaaaguuaagggagcaaaacggaccuuuuauuacuuaugga
.((.(((((((((((((((((((((.(.(((((((((((((...(((((.((.(((((.(((((((((.((((((((((........(((((..((((........))))..)))))............((.............)).........(((((((((............))))))))).)))))))))).))))))))).))))).)).)))))...))))))))))))).).))))))))))))))))))))).)).

Structure

c  u                     A G             uuu     a  a     a         a          -------------------------------------------------------------aaaaaaac     gu    gga 
 cc uaaguaauaaaaggucCGUUU G UCCCUUAACUUUA   aaagu uc guuug uccuuucug uaauuuaauu                                                                     auuaa  uuag   c
 || ||||||||||||||||||||| | |||||||||||||   ||||| || ||||| ||||||||| ||||||||||                                                                     |||||  ||||    
 gg auucauuauuuuccaggcaaa c agggaauugaaau   uuuca ag caaac aggaaagau auuaaauuaa                                                                     uaauu  aauc   c
a  u                     a g             cac     c  c     c         a          guuuauuuucaauuuaaaaccagagaauagaauaaauuaaccauaaucaaaagagggaauugaauaaau     au    aaa 

Annotation confidence Not enough data

Genome context

chr1: 20434620-20434884 [+]

Mature mtr-miR2655c

• Accession: MIMAT0013442
• Description: Medicago truncatula mtr-miR2655c mature miRNA
• Sequence: 21 - CGUUUAGGUCCCUUAACUUUA - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796