Stem-loop mtr-MIR2655h

Accession

MI0011994

Description

Medicago truncatula mtr-MIR2655h precursor miRNA

Sequence

13116 reads, 125.0 reads per million, 111 experiments

cucauaaguaauaaaaggucCGUUUAGGUCCCUUAACUUUAuuuaaaguaucaguuugaucauuuauguuaauuuaauuaaaaaaaacguuaaguuuaugaaccaaacuaauacuaauuaaauaagauaagggaucaaaauuuaacauuuuuuuaaauuaaauuaacagaaaggaccaaaccaauacuuucaAUAAAGUUAAGGGACUAAaacggaccuuuuauuauuuaugga
.((((((((((((((((((((((((.(((((((((((((((((.(((((((..(((((.((.(((.(((((((((((((.(((((((.(((((((((.(((.((...........................)).)))))))))))).))))))).))))))))))))).))).)).)))))..))))))).))))))))))))))))).)))))))))))))))))))))))).

Structure

c                        A                 u       ca     a  a   a             a       c         a   a  aaacuaauacua 
 ucauaaguaauaaaaggucCGUUU GGUCCCUUAACUUUAuu aaaguau  guuug uc uuu uguuaauuuaauu aaaaaaa guuaaguuu uga cc            a
 |||||||||||||||||||||||| ||||||||||||||||| |||||||  ||||| || ||| ||||||||||||| ||||||| ||||||||| ||| ||            u
 gguauuuauuauuuuccaggcaaA UCAGGGAAUUGAAAUAa uuucaua  caaac ag aaa acaauuaaauuaa uuuuuuu caauuuaaa acu gg            u
a                        A                 c       ac     c  g   g             a       a         -   a  gaauagaauaaa 

Annotation confidence Low

Genome context

chr7: 17456062-17456295 [+]

Mature mtr-miR2655h-5p

• Accession: MIMAT0013447
• Description: Medicago truncatula mtr-miR2655h-5p mature miRNA
• Sequence: 21 - CGUUUAGGUCCCUUAACUUUA - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2655h-3p

• Accession: MIMAT0054959
• Description: Medicago truncatula mtr-miR2655h-3p mature miRNA
• Sequence: 193 - AUAAAGUUAAGGGACUAA - 210
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796