miRBase entry: mtr-MIR2656b

Stem-loop mtr-MIR2656b


Accession
MI0012003
Description
Medicago truncatula mtr-MIR2656b precursor miRNA


Sequence

3136 reads, 30.0 reads per million, 111 experiments
acaugcauauaagaggucuAAGUUGCAUAAUCGAGUUGGagucgcauuugucgagucaaagauguuuaugauugauaaguugugaaguuguaauuguuuauacaaACUAUGAUUGAAGUGCUAAAUGA
....((((......((((..(((((.((((.(((....((.(((((((((((.(((((..........))))))))))).)))))..))....))).)))).).))))..))))...)))).......

Structure
---acau    auaaga    uA    - C    U   GUUG  -g     -      g     aaga 
       gcau      gguc  AGUU G AUAA CGA    Ga  ucgca uuuguc aguca    u
       ||||      ||||  |||| | |||| |||    ||  ||||| |||||| |||||     
       CGUG      UUAG  UCAa c uauu guu    uu  agugu gaauag uuagu    g
AGUAAAU    ---AAG    UA    a a    u   aaug  ga     u      -     auuu 


Annotation confidence Low
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Genome context
chr8: 13877779-13877906 [+]

Database links

Mature mtr-miR2656b-5p

Accession MIMAT0013456
Description Medicago truncatula mtr-miR2656b-5p mature miRNA
Sequence 20 - AAGUUGCAUAAUCGAGUUGG - 39
Evidence experimental
454 [1]

Mature mtr-miR2656b-3p

Accession MIMAT0054968
Description Medicago truncatula mtr-miR2656b-3p mature miRNA
Sequence 106 - ACUAUGAUUGAAGUGCUAAAUGA - 128
Evidence experimental
unknown

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796