Stem-loop mtr-MIR2659d

Accession

MI0012010

Description

Medicago truncatula mtr-MIR2659d precursor miRNA

Sequence

auucuacuucaaaucaauggcaucuucaaguucugccggugguucuucaucgaauauggauauagauacuucugcuuaugaaaucaaaggaagaacuaugucgauugaggaaugggagcuaaucauucaagcggaaaauccuguggauuucacuucucuaacucaCCAUGGGUGCGACUUGGUAAGauucuacaagaagcagaag
.((((.((((.......(((.(((((((((((.((((.(((((((((((......((.(((((((.(.(((((...............)))))).))))))).))))))))..(((((((.........)))(..((((((...))))))..).))))......))))).)))).)))))))..)))).)))...)))).)))).

Structure

a    a    aaaucaa   c    --       c    g     -----------------------------------------------------      ucgaau  g       a a     gcuuau 
 uucu cuuc       ugg aucu  ucaaguu ugcc guggu                                                     ucuuca      au gauauag u cuucu      g
 |||| ||||       ||| ||||  ||||||| |||| |||||                                                     ||||||      || ||||||| | |||||      a
 aaga gaag       auc uaGA  GGUUCAG GUGG UACCa                                                     aggagu      ua cuguauc a gaagg      a
g    c    ----aac   u    AU       C    G     cucaaucucuucacuuuagguguccuaaaaggcgaacuuacuaaucgagggua      ------  g       a -     aaacua 

Annotation confidence Not enough data

Genome context

chr5: 24064026-24064230 [+]

Mature mtr-miR2659d

• Accession: MIMAT0013463
• Description: Medicago truncatula mtr-miR2659d mature miRNA
• Sequence: 166 - CCAUGGGUGCGACUUGGUAAG - 186
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796