Stem-loop mtr-MIR2659f

Accession

MI0012012

Description

Medicago truncatula mtr-MIR2659f precursor miRNA

Sequence

auucuacuucaaaucaauggcaucuucaaguucugccggugguucuucaucgaauauggauauagauacuccugcuuaugaaaucaaaggaagaacuaugucuauugaggaaugggagcuaaucauucaagcggaaaauccuguggauuucacuucucuaacucaCCAUGGGUGCGACUUGGUAAGauucuacaagaagcagaag
.((((.((((.......(((.(((((((((((.((((.(((((((((((......((((((((((.(..((((..............))))..).))))))))))))))))..(((((((.........)))(..((((((...))))))..).))))......))))).)))).)))))))..)))).)))...)))).)))).

Structure

a    a    aaaucaa   c    --       c    g     -----------------------------------------------------      ucgaau          a ac    gcuuau 
 uucu cuuc       ugg aucu  ucaaguu ugcc guggu                                                     ucuuca      auggauauag u  uccu      g
 |||| ||||       ||| ||||  ||||||| |||| |||||                                                     ||||||      |||||||||| |  ||||       
 aaga gaag       auc uaGA  GGUUCAG GUGG UACCa                                                     aggagu      uaucuguauc a  agga      a
g    c    ----aac   u    AU       C    G     cucaaucucuucacuuuagguguccuaaaaggcgaacuuacuaaucgagggua      ------          a ga    aacuaa 

Annotation confidence Not enough data

Genome context

chr5: 35574877-35575081 [-]

Mature mtr-miR2659f

• Accession: MIMAT0013465
• Description: Medicago truncatula mtr-miR2659f mature miRNA
• Sequence: 166 - CCAUGGGUGCGACUUGGUAAG - 186
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796