Stem-loop mtr-MIR2663

Accession

MI0012017

Description

Medicago truncatula mtr-MIR2663 precursor miRNA

Sequence

1112 reads, 11.0 reads per million, 111 experiments

cauuaaaaauaaucaaauaaUUAGAGAGGGCGUUACAAUUuuuauggugaugcucgugguggguggugguggacuuuugugaugguuaauggugauUUUUGUGGUGGUUAAUGG
((((((.....((((...(((((....((.((((((((..(((((.((.((.(.......).)).)).)))))...)))))))).)).....)))))....))))..)))))).

Structure

-      aaaua    -aau     -GAGA  G        -UU     g  g  g uc 
 cauuaa     auca    aaUUA     GG CGUUACAA   uuuau gu au c  g
 ||||||     ||||    |||||     || ||||||||   ||||| || || |  u
 GUAAUU     UGGU    Uuagu     uu guaguguu   aggug ug ug g  g
G      ---GG    GUUU     gguaa  g        uuc     g  g  g ug 

Annotation confidence Low

Genome context

chr4: 10589879-10589992 [-]

Mature mtr-miR2663-5p

• Accession: MIMAT0013470
• Description: Medicago truncatula mtr-miR2663-5p mature miRNA
• Sequence: 21 - UUAGAGAGGGCGUUACAAUU - 40
• Evidence: experimental ; 454 [1]

Mature mtr-miR2663-3p

• Accession: MIMAT0054979
• Description: Medicago truncatula mtr-miR2663-3p mature miRNA
• Sequence: 97 - UUUUGUGGUGGUUAAUGG - 114
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796