Stem-loop mtr-MIR2665

Accession

MI0012019

Description

Medicago truncatula mtr-MIR2665 precursor miRNA

Sequence

uaugaagaggagUGAUUUCAGGUCAAGAAUUGAuccaauaccaccccucaaugaagaaaauggaagagaaaacuagggucgguuuguuggaaagggauauauaggauugucau
...........(((((.((..........((..((((((((((((((((................))).......)))).)))..))))))..)).........))..)))))

Structure

uaugaagagga     -U  AGGUCAAGAA  GA      --   -    -------   aaugaag 
           gUGAU  UC          UU  uccaau  acc accc       cuc       a
           |||||  ||          ||  ||||||  ||| ||||       |||        
           uacug  ag          gg  agguug  ugg uggg       gag       a
-----------     uu  -gauauauag  aa      uu   c    aucaaaa   aagguaa 

Annotation confidence Not enough data

Genome context

chr5: 16554970-16555082 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mtr-MIR2665

Mature mtr-miR2665

• Accession: MIMAT0013472
• Description: Medicago truncatula mtr-miR2665 mature miRNA
• Sequence: 13 - UGAUUUCAGGUCAAGAAUUGA - 33
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796