Stem-loop mtr-MIR2666

Accession

MI0012020

Description

Medicago truncatula mtr-MIR2666 precursor miRNA

Sequence

uugaccuuuuguuuauauuaaguuccuuuguauuuucuuucuuuucuucuaaagugccccaguucugcauaaauauucuugugcgugugaaagaaucauucccuguuugcuuaauaugugacauauaguugauaucuuaagcuuuuauuuuaaaucuccgauuucuugccauguuguuaauguacuauaugauaauugcaccuauaauuuguuucugaauaagcuacuggacaacauuuccugauucuuugcaaguuuuuggaaacaauucaacuuccacauacacauauacaauuauacuucucuuacucaaauuuaccauuuacuuuuggcacauacgcaaacguaaauaugcauuuuucauugguuuauuuuuuucauaggaaCGAAAGUGAGGAUAUCAAGGAuauuguugaaaaaguuac
.((((.((((.....((.(((..(((((.((((((((((((.(((((...((((((..(((((..((((((..(((..(((((.((((((((((((((..........((((((.(((((((.....))).)))).)))))).........(((((...)))))......((((((((...(((((.(((.......(((.........)))......))))).)))..))))))))....)))))))))....((...(((((..........)))))...))..................................(((........)))))))).)))))..)))..))))))......)))))..))))))......))))).))))..)))))))).)))))..))).)))))).)))).

Structure

u    c    guuua  u   gu     u        --    u     ---ucu      cc     ----uc      aa   uc     c     ----------------------------------------------------------------------------------         uucccuguuugcuuaauaugugacauauaguugauaucuuaagcuuuuauuuuaaaucuccgauuucuugcc        aau   -  a   gauaauu   ccu 
 ugac uuuu     ua uaa  uccuu guauuuuc  uuuc uuucu      aaagug  ccagu      ugcaua  uau  uugug gugug                                                                                  aaagaauca                                                                        auguuguu   gua cu uau       gca   a
 |||| ||||     || |||  ||||| ||||||||  |||| |||||      ||||||  |||||      ||||||  |||  ||||| |||||                                                                                  |||||||||                                                                        ||||||||   ||| || |||       |||   u
 auug aaaa     gu guu  AGGAA UAUAGGAG  AAAG aagga      uuuuau  gguua      acguau  aug  aacgc uacac                                                                                  uuucuuagu                                                                        uacaacag   cau ga aua       ugu   a
c    a    -----  u   au     C        UG    C     uacuuu      uu     cuuuuu      aa   ca     a     gguuuucauuuaccauuuaaacucauucucuucauauuaacauauacacauacaccuucaacuuaacaaagguuuuugaacg         --------------------------------------------------------------------ccuu        -gu   c  -   -agucuu   uua 

Annotation confidence Not enough data

Genome context

chr4: 3266952-3267376 [-]

Mature mtr-miR2666

• Accession: MIMAT0013473
• Description: Medicago truncatula mtr-miR2666 mature miRNA
• Sequence: 387 - CGAAAGUGAGGAUAUCAAGGA - 407
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796