miRBase entry: mtr-MIR2669a

Stem-loop mtr-MIR2669a


Accession
MI0012023
Description
Medicago truncatula mtr-MIR2669a precursor miRNA


Sequence

2924 reads, 34.0 reads per million, 111 experiments
auggugaaauuAUGAGAAUGACUUUUCUGGUGAAGucaacacuauaguauuaaaaguguagugaguagcaccccacuguuuauAAAGUUCAGUCUUCAUAGUAUCaucaa
.((((((.((((((((..(((((((......))))))).(((((((.(......).)))))))...........((((...........)))).)))))))).)))))).

Structure
a      a        ------------------------------------------------------AA       UC 
 ugguga auuAUGAG                                                        UGACUUU  U
 |||||| ||||||||                                                        |||||||   
 acuaCU UGAUACUU                                                        acuGAAG  G
a      A        CUGACUUGAAAuauuugucaccccacgaugagugaugugaaaauuaugauaucaca       UG 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
chr8: 22210698-22210807 [-]

Database links

Mature mtr-miR2669a-5p

Accession MIMAT0054985
Description Medicago truncatula mtr-miR2669a-5p mature miRNA
Sequence 12 - AUGAGAAUGACUUUUCUGGUGAAG - 35
Evidence experimental
unknown

Mature mtr-miR2669a-3p

Accession MIMAT0013476
Description Medicago truncatula mtr-miR2669a-3p mature miRNA
Sequence 84 - AAAGUUCAGUCUUCAUAGUAUC - 105
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796