Stem-loop mtr-MIR2670a

Accession

MI0012025

Description

Medicago truncatula mtr-MIR2670a precursor miRNA

Sequence

1657 reads, 17.0 reads per million, 111 experiments

agugaucaaacuuuuuuggGGUAAAAUAGUGAGUAGCCGAuuuggugaagugaucaaccauucugauaaguuuaaaucuguuuuuuuuuacuccugaaacuuuuuaccauggguaaaaggauuuuucuugggguauaaaaaaaaaaccagauuuaaauuuagcccaaggguugaugagguauuuuccucaagaagguUGCUCACUAUUUUACCCCAAGaugauuucac
.(.(((((.....(((((((((((((((((((((((((..(((((.(((((.(((((((.......((((((((((((((((((((((((((((.(((((((((((((...)))))))))...))))..))))))...)))))))).)))))))))))))).......))))))).).....)))).)))))..)))))))))))))))))))))))))))))).)..

Structure

-a u     aacuu                         GA     u    ----- g       auucuga              -        ---      -u    ---         a 
  g gauca     uuuuggGGUAAAAUAGUGAGUAGCC  uuugg gaag     u aucaacc       uaaguuuaaaucug uuuuuuuu   uacucc  gaaa   cuuuuuacc  
  | |||||     |||||||||||||||||||||||||  ||||| ||||     | |||||||       |||||||||||||| ||||||||   ||||||  ||||   ||||||||| u
  c uuagu     aGAACCCCAUUUUAUCACUCGUugg  gaacu cuuu     a uaguugg       auuuaaauuuagac aaaaaaaa   augggg  cuuu   ggaaaaugg  
ca u     -----                         aa     c    uaugg g       gaacccg              c        aau      uu    uua         g 

Annotation confidence Low

Genome context

chr2: 24709014-24709241 [+]

Mature mtr-miR2670a-5p

• Accession: MIMAT0054987
• Description: Medicago truncatula mtr-miR2670a-5p mature miRNA
• Sequence: 20 - GGUAAAAUAGUGAGUAGCCGA - 40
• Evidence: experimental ; unknown

Mature mtr-miR2670a-3p

• Accession: MIMAT0013478
• Description: Medicago truncatula mtr-miR2670a-3p mature miRNA
• Sequence: 198 - UGCUCACUAUUUUACCCCAAG - 218
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796