Stem-loop mtr-MIR2670a

Accession

MI0012025

Description

Medicago truncatula mtr-MIR2670a precursor miRNA

Sequence

agugaucaaacuuuuuugggguaaaauagugaguagccgauuuggugaagugaucaaccauucugauaaguuuaaaucuguuuuuuuuuacuccugaaacuuuuuaccauggguaaaaggauuuuucuugggguauaaaaaaaaaaccagauuuaaauuuagcccaaggguugaugagguauuuuccuCAAGAAGGUUGCUCACUAUUUuaccccaagaugauuucac
.(.(((((.....(((((((((((((((((((((((((..(((((.(((((.(((((((.......((((((((((((((((((((((((((((.(((((((((((((...)))))))))...))))..))))))...)))))))).)))))))))))))).......))))))).).....)))).)))))..)))))))))))))))))))))))))))))).)..

Structure

-a u     aacuu                         ga     u    ----- g       auucuga              -        ---      -u    ---         a 
  g gauca     uuuugggguaaaauagugaguagcc  uuugg gaag     u aucaacc       uaaguuuaaaucug uuuuuuuu   uacucc  gaaa   cuuuuuacc  
  | |||||     |||||||||||||||||||||||||  ||||| ||||     | |||||||       |||||||||||||| ||||||||   ||||||  ||||   ||||||||| u
  c uuagu     agaaccccauUUUAUCACUCGUUGG  GAACu cuuu     a uaguugg       auuuaaauuuagac aaaaaaaa   augggg  cuuu   ggaaaaugg  
ca u     -----                         AA     c    uaugg g       gaacccg              c        aau      uu    uua         g 

Annotation confidence Not enough data

Genome context

chr2: 24709014-24709241 [+]

Mature mtr-miR2670a

• Accession: MIMAT0013478
• Description: Medicago truncatula mtr-miR2670a mature miRNA
• Sequence: 189 - CAAGAAGGUUGCUCACUAUUU - 209
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796