Stem-loop mtr-MIR2670b

Accession

MI0012026

Description

Medicago truncatula mtr-MIR2670b precursor miRNA

Sequence

ugaucaaacuucuucgggauaaaauagugaguagcugacuuagggaagugaucgaccauugggauaaguuuaaaucugcuauuuuuuacuccauaaacuuuuuaccguggguaaaaagauucuuguugggguauaaaaaaaaccagacuuaaauuuagcccaaggguuggugauguauuuucucCAAGAAGGUUGCUCACUAUUUuaccccaugaagauugauu
.((((((.((((...(((.(((((((((((((((((..(((.(((((((.(((((((.(((((.(((((((((.((((...((((((((((((..(((((((((((...)))))))))....))..))))))).)))))....)))).))))))))).))))).))))))).)).....))))).)))..))))))))))))))))))))...)))).))))))

Structure

u      a    uuc   a                 ga   a     -----  g       a     a         a    -cua     -       ua  ----         g 
 gaucaa cuuc   ggg uaaaauagugaguagcu  cuu gggaa     gu aucgacc uuggg uaaguuuaa ucug    uuuuu uacucca  aa    cuuuuuacc  
 |||||| ||||   ||| |||||||||||||||||  ||| |||||     || ||||||| ||||| ||||||||| ||||    ||||| |||||||  ||    ||||||||| u
 uuaguu gaag   ccc auUUUAUCACUCGUUGG  GAA cucuu     ua ugguugg aaccc auuuaaauu agac    aaaaa auggggu  uu    gaaaaaugg  
-      a    uac   -                 AA   C     uuaug  g       g     g         c    caaa     u       ug  cuua         g 

Annotation confidence Not enough data

Genome context

chr4: 23357485-23357708 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2670b

Mature mtr-miR2670b

• Accession: MIMAT0013479
• Description: Medicago truncatula mtr-miR2670b mature miRNA
• Sequence: 185 - CAAGAAGGUUGCUCACUAUUU - 205
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796