Stem-loop mtr-MIR2670d

Accession

MI0012028

Description

Medicago truncatula mtr-MIR2670d precursor miRNA

Sequence

ugaucaaucuucuucgggguaaaauagugaguagccgacuuagggaaguaaucaacccuugggauaaguuuaaauauccuuuuuuaaaccccagaaacuuuuuaccguugguaaaaauaaucuucuucggguaaaaaaaaaaccagauuuaaauuuagcucaaugguugaugauguauuuucccCAAGAAGGUUGCUCACUAUUUuaccccacaaagauuuuuc
.((..((((((....(((((((((((((((((((((..(((.((((((..(((((((.(((((.(((((((((((....((((((..((((.((((..((((((((...)))))))).....))))..))))..))))))......))))))))))).))))).))))))).......)))))).)))..)))))))))))))))))))))...))))))..))

Structure

u  uc      cuuc                     ga   a      -----ua       c     a           --aucc      aa    -c    ---ac        g 
 ga  aaucuu    gggguaaaauagugaguagcc  cuu gggaag       aucaacc uuggg uaaguuuaaau      uuuuuu  accc  agaa     uuuuuacc  
 ||  ||||||    |||||||||||||||||||||  ||| ||||||       ||||||| ||||| |||||||||||      ||||||  ||||  ||||     |||||||| u
 cu  uuagaa    ccccauUUUAUCACUCGUUGG  GAA cccuuu       uaguugg aacuc auuuaaauuua      aaaaaa  uggg  ucuu     aaaaaugg  
-  uu      -aca                     AA   C      uauguag       u     g           gaccaa      aa    cu    cuaau        u 

Annotation confidence Not enough data

Genome context

chr8: 3203936-3204159 [+]

Mature mtr-miR2670d

• Accession: MIMAT0013481
• Description: Medicago truncatula mtr-miR2670d mature miRNA
• Sequence: 185 - CAAGAAGGUUGCUCACUAUUU - 205
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796