Stem-loop mtr-MIR2671j

Accession

MI0012029

Description

Medicago truncatula mtr-MIR2671j precursor miRNA

Sequence

12729 reads, 119.0 reads per million, 111 experiments

uggcuuaauuacuuuuuuggucccuuaacuuaaUUUUUGGUUUCGUUUUGGUuccuuaacuaUUAAAAGUUUCGUUUCGGUCCcauaacuuauuuuuggguu
..((((((.........(((..((..(((..((((((((((...(((..(....)..))).))))))))))..)))..))..)))..........)))))).

Structure

ug      -uuacuuuuu   uc  uu   uu          UUC   UU G 
  gcuuaa          ugg  cc  aac  aaUUUUUGGU   GUU  G U
  ||||||          |||  ||  |||  ||||||||||   |||  |  
  uggguu          acC  GG  UUG  UUGAAAAUUa   caa  c u
-u      uuuauucaau   CU  CU   CU          --u   uu c 

Annotation confidence Low

Genome context

chr4: 243605-243706 [+]

Mature mtr-miR2671j-5p

• Accession: MIMAT0054991
• Description: Medicago truncatula mtr-miR2671j-5p mature miRNA
• Sequence: 34 - UUUUUGGUUUCGUUUUGGU - 52
• Evidence: experimental ; unknown

Mature mtr-miR2671j-3p

• Accession: MIMAT0013482
• Description: Medicago truncatula mtr-miR2671j-3p mature miRNA
• Sequence: 63 - UUAAAAGUUUCGUUUCGGUCC - 83
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796