Stem-loop mtr-MIR2671a

Accession

MI0012030

Description

Medicago truncatula mtr-MIR2671a precursor miRNA

Sequence

58201 reads, 528.0 reads per million, 111 experiments

uucguuugguuccuuaacuaUUAAAAGUUUCGUUUCGGUCCcauaauuuauuuuuugguuucauuuuggucccuuaacuauuaaaaguuucguuuugguccuuuaacuuacuuuuugguuucauuuuggucccuuaacuuauuuuuugguuucauuuugaucccuuaacucuaauacauucauccuaacauaaaggaccaaagugguugacagaggaugaguuaagggaccaaaacaaaaccaaaaaguaaguuaaaggaccaaaacgaaacuuuuaauAGUUAAGGGACCAAAACGAAAccaaaaaguaaguuaagggaccaaaacaaaacuuuuaauaguuaagguaccaaaacgaaa
((((((((((.(((((((((((((((((((.((((.((((((.(((((((((((((((((((.((((((((((((((((((((((((((((((((((((((((((((((((((((((((((..(((((((((((((((((((((((((...((((((((.(((.(((.......................))).))).))))))))....)))))))))))))))))))))))))..)))))))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))).)))))).)))).))))))))))))))))))).))).))))))).

Structure

-       -   u                   C    C      a                   a                                                          ca                         -guu        a   c   acucuaauac 
 uucguuu ggu ccuuaacuaUUAAAAGUUU GUUU GGUCCc uaauuuauuuuuugguuuc uuuuggucccuuaacuauuaaaaguuucguuuugguccuuuaacuuacuuuuugguuu  uuuuggucccuuaacuuauuuuuug    ucauuuug ucc uua          a
 ||||||| ||| ||||||||||||||||||| |||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    |||||||| ||| |||          u
 aagcaaa cca ggaauugauaauuuucaaa caaa ccaggg auugaaugaaaaaccAAAG AAAACCAGGGAAUUGAuaauuuucaaagcaaaaccaggaaauugaaugaaaaaccaaa  aaaaccagggaauugaguaggagac    ggugaaac agg aau          u
a       a   u                   a    a      a                   C                                                          ac                         aguu        c   a   acaauccuac 

Annotation confidence Low

Genome context

chr4: 19714431-19714790 [-]

Mature mtr-miR2671a-5p

• Accession: MIMAT0013483
• Description: Medicago truncatula mtr-miR2671a-5p mature miRNA
• Sequence: 21 - UUAAAAGUUUCGUUUCGGUCC - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2671a-3p

• Accession: MIMAT0054992
• Description: Medicago truncatula mtr-miR2671a-3p mature miRNA
• Sequence: 280 - AGUUAAGGGACCAAAACGAAA - 300
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796