Stem-loop mtr-MIR2671d

Accession

MI0012033

Description

Medicago truncatula mtr-MIR2671d precursor miRNA

Sequence

62518 reads, 569.0 reads per million, 111 experiments

ucguuuugguuccuuaacuaUUAAAAGUUUCGUUUCGGUCCcauaacuuauuuuuggguuuucuuuuggucccuuaacuauuaaaaguuucguuuuggucccuuaacuuauuuuuugguuucguuuuggucccuuaacuuauuuuuuuuguuucauuuuggucccuuaacucuaauacauucauccuaacauaaaggaccaaagaggcugacgaaggaagaguuaagggaccaaaaugaaaccaaaaaguaaguuaaaggaccaaaaagaaacuuuuaauaguuaagggaccaaaaugaaaccaaaaaguaaguuaagggaccaaaacaaaacuuuuaauAGUUAAGGGACCAAAACGAA
((((((((((((((((((((((((((((((.((((.((((((.((((((((((((.((((((.((((((((((((((((((((((((((((.(((((((((.((((((((((((((((((((((((((((((((((((((..((((((((((((.(((((((((.(((.......................))).))))))))).))..)))))))))))))))))))))))))))))))))))))))))))))))).))))))))).)))))))))))))))))))))))))))).)))))).)))))))))))).)))))).)))).)))))))))))))))))))))))))))))).

Structure

-                              C    C      a            g      c                            g         c                                      au          --  a         c   acucuaauac 
 ucguuuugguuccuuaacuaUUAAAAGUUU GUUU GGUCCc uaacuuauuuuu gguuuu uuuuggucccuuaacuauuaaaaguuuc uuuuggucc uuaacuuauuuuuugguuucguuuuggucccuuaacuu  uuuuuuuguu  uc uuuuggucc uua          a
 |||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||  || ||||||||| |||          u
 AGCAAAACCAGGGAAUUGAuaauuuucaaa caaa ccaggg auugaaugaaaa ccaaag aaaaccagggaauugauaauuuucaaag aaaaccagg aauugaaugaaaaaccaaaguaaaaccagggaauugag  aaggaagcag  gg gaaaccagg aau          u
A                              a    a      a            a      u                            a         a                                      --          uc  a         a   acaauccuac 

Annotation confidence Low

Genome context

chr5: 22261365-22261724 [+]

Mature mtr-miR2671d-5p

• Accession: MIMAT0013486
• Description: Medicago truncatula mtr-miR2671d-5p mature miRNA
• Sequence: 21 - UUAAAAGUUUCGUUUCGGUCC - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2671d-3p

• Accession: MIMAT0054995
• Description: Medicago truncatula mtr-miR2671d-3p mature miRNA
• Sequence: 341 - AGUUAAGGGACCAAAACGAA - 360
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796