Stem-loop mtr-MIR2671d

Accession

MI0012033

Description

Medicago truncatula mtr-MIR2671d precursor miRNA

Sequence

ucguuuugguuccuuaacuaUUAAAAGUUUCGUUUCGGUCCcauaacuuauuuuuggguuuucuuuuggucccuuaacuauuaaaaguuucguuuuggucccuuaacuuauuuuuugguuucguuuuggucccuuaacuuauuuuuuuuguuucauuuuggucccuuaacucuaauacauucauccuaacauaaaggaccaaagaggcugacgaaggaagaguuaagggaccaaaaugaaaccaaaaaguaaguuaaaggaccaaaaagaaacuuuuaauaguuaagggaccaaaaugaaaccaaaaaguaaguuaagggaccaaaacaaaacuuuuaauaguuaagggaccaaaacgaa
((((((((((((((((((((((((((((((.((((.((((((.((((((((((((.((((((.((((((((((((((((((((((((((((.(((((((((.((((((((((((((((((((((((((((((((((((((..((((((((((((.(((((((((.(((.......................))).))))))))).))..)))))))))))))))))))))))))))))))))))))))))))))))).))))))))).)))))))))))))))))))))))))))).)))))).)))))))))))).)))))).)))).)))))))))))))))))))))))))))))).

Structure

-                              C    C      a            g      c                            g         c                                      au          --  a         c   acucuaauac 
 ucguuuugguuccuuaacuaUUAAAAGUUU GUUU GGUCCc uaacuuauuuuu gguuuu uuuuggucccuuaacuauuaaaaguuuc uuuuggucc uuaacuuauuuuuugguuucguuuuggucccuuaacuu  uuuuuuuguu  uc uuuuggucc uua          a
 |||||||||||||||||||||||||||||| |||| |||||| |||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||  || ||||||||| |||          u
 agcaaaaccagggaauugauaauuuucaaa caaa ccaggg auugaaugaaaa ccaaag aaaaccagggaauugauaauuuucaaag aaaaccagg aauugaaugaaaaaccaaaguaaaaccagggaauugag  aaggaagcag  gg gaaaccagg aau          u
a                              a    a      a            a      u                            a         a                                      --          uc  a         a   acaauccuac 

Annotation confidence Not enough data

Genome context

chr5: 22261365-22261724 [+]

Mature mtr-miR2671d

• Accession: MIMAT0013486
• Description: Medicago truncatula mtr-miR2671d mature miRNA
• Sequence: 21 - UUAAAAGUUUCGUUUCGGUCC - 41
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796