Stem-loop mtr-MIR2671f

Accession

MI0012035

Description

Medicago truncatula mtr-MIR2671f precursor miRNA

Sequence

65520 reads, 585.0 reads per million, 111 experiments

ucguuuugguuccuuaacuaUUAAAAGUUUCGUUUCGGUCCcauaacuuauuuuuggguuuucuuuuggucccuuaacuauuaaaaguuucguuuuggucccuuaacuuauuuuuuaguuucguuuugguccuuuaacuuauuuuuugguuucauuuuggucccuuaacucuauugcauucauccuaacauaaaggaccaaagugguugaccgaggaagAGUUAAGGGACCAAAACGAAACcaaaaaguaaguuaaaggaccaaaacgaaacuuuuaauaguuaagggaccaaaacgaaaccaaaaaguaaguuaagggaccaaaacgaaacuuuuaauaguuaugggaccaaaaugaa
(((((((((((((.(((((((((((((((((((((.((((((.((((((((((((.((((((.((((((((((((((((((((((((((((((((((((((.((((((((((((((.(((((((((((((((((((((((.((((((((((((((((((((((.(((.......................))).))))))))))))..))))))))))))))))))))))))))))))))).)))))))))))))).)))))))))))))))))))))))))))))))))))))).)))))).)))))))))))).)))))).))))))))))))))))))))).))))))))))))).

Structure

-             u                     C      a            g      c                                      c              a                       a          --            c   acucuauugc 
 ucguuuugguucc uaacuaUUAAAAGUUUCGUUU GGUCCc uaacuuauuuuu gguuuu uuuuggucccuuaacuauuaaaaguuucguuuuggucc uuaacuuauuuuuu guuucguuuugguccuuuaacuu uuuuuugguu  ucauuuuggucc uua          a
 ||||||||||||| ||||||||||||||||||||| |||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||  |||||||||||| |||          u
 aguaaaaccaggg auugauaauuuucaaagcaaa ccaggg auugaaugaaaa ccaaag aaaaccagggaauugauaauuuucaaagcaaaaccagg aauugaaugaaaaa CAAAGCAAAACCAGGGAAUUGAg aaggagccag  ggugaaaccagg aau          u
a             u                     a      a            a      c                                      a              c                       -          uu            a   acaauccuac 

Annotation confidence Low

Genome context

chr5: 42437335-42437693 [-]

Mature mtr-miR2671f-5p

• Accession: MIMAT0013488
• Description: Medicago truncatula mtr-miR2671f-5p mature miRNA
• Sequence: 21 - UUAAAAGUUUCGUUUCGGUCC - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2671f-3p

• Accession: MIMAT0054997
• Description: Medicago truncatula mtr-miR2671f-3p mature miRNA
• Sequence: 220 - AGUUAAGGGACCAAAACGAAAC - 241
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796