Stem-loop mtr-MIR2671h

Accession

MI0012037

Description

Medicago truncatula mtr-MIR2671h precursor miRNA

Sequence

54698 reads, 512.0 reads per million, 111 experiments

ucguuuugguuccuuaacuaUUAAAAGUUUCGUUUCGGUCCcauaacuuauuuuuugguuucauuuuggucccuuaacuauuaaaaguuucguuuugguccuuuaacuuacuuuuugguuucguuuuggucccuuaacuuauuuuuugguuucauuuuggucccuuaacucuaauacauucauccuaacauaaaggaccaaagugguugacagaggaugaguuaagggaccaaaacaaaaccaaaaaguaaguuaaaggaucaaaacgaaaccaaaaaguaAGUUAAGGGACCAAAACGAAACuuuuaauaguuaagguaccaaaacgaa
((((((((((.((((((((((((((((((((((((.((((((.(((((((((((((((((((....((((......))))...........((((((((((((((((((((((((((((((.((((((((((((((((((((((((((...((((((((((((.(((.......................))).))))))))))))....)))))))))))))))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))).)))))).)))))))))))))))))))))))).)))))))))).

Structure

-          u                        C      a                   auuuuggucccuuaacuauuaaaaguuuc                              c                          -guu            c   acucuaauac 
 ucguuuuggu ccuuaacuaUUAAAAGUUUCGUUU GGUCCc uaacuuauuuuuugguuuc                             guuuugguccuuuaacuuacuuuuugguuu guuuuggucccuuaacuuauuuuuug    ucauuuuggucc uua          a
 |||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||                             |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    |||||||||||| |||          u
 agcaaaacca ggaauugauaauuuuCAAAGCAAA CCAGGG AUUGAaugaaaaaccaaag                             caaaacuaggaaauugaaugaaaaaccaaa caaaaccagggaauugaguaggagac    ggugaaaccagg aau          u
a          u                        A      A                   -----------------------------                              a                          aguu            a   acaauccuac 

Annotation confidence Low

Genome context

chr4: 46468156-46468485 [+]

Mature mtr-miR2671h-5p

• Accession: MIMAT0013490
• Description: Medicago truncatula mtr-miR2671h-5p mature miRNA
• Sequence: 21 - UUAAAAGUUUCGUUUCGGUCC - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2671h-3p

• Accession: MIMAT0054999
• Description: Medicago truncatula mtr-miR2671h-3p mature miRNA
• Sequence: 282 - AGUUAAGGGACCAAAACGAAAC - 303
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796