Stem-loop mtr-MIR2671i

Accession

MI0012038

Description

Medicago truncatula mtr-MIR2671i precursor miRNA

Sequence

57355 reads, 517.0 reads per million, 111 experiments

ucguuuugguuccuuaacuaUUAAAAGUUUCGUUUCGGUCCcauaacuuauuuuuggguuuucuuuuggucccuuaaguauuagaaguuucguuuugguaccuuaacuuauuuuuugguuucguuuuggucccuuaacuuauuuuuugguuucguuuuggucccuuaacucuaauacauucauccuaacauaaaggacuaaagugguugacgaaggaagaguuaaggaccaaaacgaaaccaaaaaguaaguuaaaggaccaaaacgaaacuuuuaauAGUUAAGGGACCAAAACGAAACcaaaaaguaaguuaagagaccaaaacgaaacuuuuaauaguuaagggaccaaaacgaa
(((((((((((((((((((((((((((((((((((.((((.(.((((((((((((.((((((.((((((((((((((.(((((((((((((((((((((.((((((((((((((((((((((((((((((((.(((((((.(((((((...((((((((((((.(((.......................))).))))))))))))....))))))).))))))))))))))))))))))))))))))))))).))))))))))))))))))))))))).)))))))))))))).)))))).)))))))))))).).)))).))))))))))))))))))))))))))))))))))).

Structure

-                                   C    C a            g      c              g                     a    -                            c       a       -guu            c   acucuaauac 
 ucguuuugguuccuuaacuaUUAAAAGUUUCGUUU GGUC c uaacuuauuuuu gguuuu uuuuggucccuuaa uauuagaaguuucguuuuggu ccuu aacuuauuuuuugguuucguuuuggucc uuaacuu uuuuuug    ucguuuuggucc uua          a
 ||||||||||||||||||||||||||||||||||| |||| | |||||||||||| |||||| |||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| |||||||    |||||||||||| |||          u
 agcaaaaccagggaauugauaauuuucaaagcaaa ccag g auugaaugaaaa cCAAAG AAAACCAGGGAAUU Auaauuuucaaagcaaaacca ggaa uugaaugaaaaaccaaagcaaaaccagg aauugag aggaagc    ggugaaaucagg aau          u
a                                   a    a a            a      C              G                     -    a                            -       a       aguu            a   acaauccuac 

Annotation confidence Low

Genome context

chr8: 4398878-4399235 [-]

Mature mtr-miR2671i-5p

• Accession: MIMAT0013491
• Description: Medicago truncatula mtr-miR2671i-5p mature miRNA
• Sequence: 21 - UUAAAAGUUUCGUUUCGGUCC - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2671i-3p

• Accession: MIMAT0055000
• Description: Medicago truncatula mtr-miR2671i-3p mature miRNA
• Sequence: 279 - AGUUAAGGGACCAAAACGAAAC - 300
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796