Stem-loop mtr-MIR2673a

Accession

MI0012040

Description

Medicago truncatula mtr-MIR2673a precursor miRNA

Sequence

gucuuCCUCUUCCUCUUCCUCUUCCACauccucgucaagaauuucagcaucaucguuaguuuccauagcgacuucauuuugcauuugugaagcugaauugguccagauuucauuaacgaagucaucgucauuaaacccugcugccagauuuucuaugggauuuguuugugaauuuggccauugaggugcauagcuuguuuggggauaguugacaaaguguggagggguugguagguugaacgaggag
.(((((.((..(((((..((((((((((((((((.((((.......(((((.(((((((((((((..((((.......))))...)).))))))))..(((.(((((((.(((.(((((....(((.((((.(((..(((....)))..)))..)))))))))))).))))))))))))).))))))))....))))..))))))............))))))))))..)).)))..))..))))).

Structure

g     -C  UU   -  UC          ------------      -u    aauuuca     a   uuaguuuccauagcgacuucauuuugcauuugugaagcugaau   u       u   u     aguc   g    -u   cc   c 
 ucuuC  UC  CCU CU  CUCUUCCACa            uccucg  caag       gcauc ucg                                           ugg ccagauu cau aacga    auc ucau  aaa  cug u
 |||||  ||  ||| ||  ||||||||||            ||||||  ||||       ||||| |||                                           ||| ||||||| ||| |||||    ||| ||||  |||  |||  
 aggag  ag  gga gg  ggggaggugu            aggggu  guuc       cgugg agu                                           acc gguuuaa gug uuguu    uag ggua  uuu  gac g
g     ca  uu   u  uu          gaaacaguugau      uu    ---gaua     -   ------------------------------------------u   -       -   u     ----   -    uc   ua   c 

Annotation confidence Not enough data

Genome context

chr3: 36153447-36153693 [-]

Mature mtr-miR2673a

• Accession: MIMAT0013493
• Description: Medicago truncatula mtr-miR2673a mature miRNA
• Sequence: 6 - CCUCUUCCUCUUCCUCUUCCAC - 27
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796