Stem-loop mtr-MIR2674

Accession

MI0012042

Description

Medicago truncatula mtr-MIR2674 precursor miRNA

Sequence

aauuagaagcucuggcuggaaaacacgaaugguuuaaucgcucaagucgaaucaucaucacaacucgggacaaaagguugcuaacaugucaugggauugaauguaaauaugaggugaagggguugaaugacauagaugcugcugaguugguuagaaggaaagcuuuuaaagaugaauuuaguccaagcuacaaaaauguuucaacagaaaaaaugcauguuuuagaacguguuguaacauaugccucuggucaucCACUCGCUUUGGAAGUCAUGGguucucacuuuucuaaua
.((((((((((((((((...(((..(((.(((.((((((.((((..(((......(((..(((((((.((((..((....))....)))).)))).))).)))......)))..)).)).))))))(((((.((((.((.((((((((.((((((((.....)))))...))).))))))))......(((((..((((((.((((...........))))...)))))).)))))......)).)))))))))))).))).)))...))))).))))........))))))).

Structure

a       --------    -     gga   ca   a   -------------------------------------------------------------------------------------------------------------------------------u      g  -  ag   aaucau   ca   -    g    --aa  g 
 auuagaa        gcuc uggcu   aaa  cga ugg                                                                                                                                uuaauc cu ca  ucg      cau  caa cucg gaca    ag u
 |||||||        |||| |||||   |||  ||| |||                                                                                                                                |||||| || ||  |||      |||  ||| |||| ||||    ||  
 uaaucuu        ugGG ACUGA   UUU  GCU ACc                                                                                                                                aguugg ga gu  agu      gua  guu gggu cugu    uc u
a       uucacucu    U     AGG   -C   C   uacuggucuccguauacaauguugugcaagauuuuguacguaaaaaagacaacuuuguaaaaacaucgaaccugauuuaaguagaaauuuucgaaaggaagauugguugagucgucguagauacagua      g  a  gg   auaaau   -a   a    a    acaa  g 

Annotation confidence Not enough data

Genome context

chr6: 17900754-17901047 [-]

Mature mtr-miR2674

• Accession: MIMAT0013495
• Description: Medicago truncatula mtr-miR2674 mature miRNA
• Sequence: 256 - CACUCGCUUUGGAAGUCAUGG - 276
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796