Stem-loop mtr-MIR2676a

Accession

MI0012045

Description

Medicago truncatula mtr-MIR2676a precursor miRNA

Sequence

21379 reads, 210.0 reads per million, 111 experiments

aaauacuuugagaugaauuccauuguuuggauaauaauuugaagaauuuucaaaaugaUGGAAAUUUAUGAAGUAUUUUguucaaguuaaaauuagagaauuucaaaugacaccuaaaaguguguuuggaugaaugaauguuuugagggaauucaaauacuuuaagaugaauucCAUUGUUUGGAUAAUAAUUUGaagaauuuucaaaaugauggaaauuuaugaaguauuuu
(((((((((...((((((((((((((((.((.(((..((((((..(((.((.(((((((((((.((((((((((((((.((((...(((((((........(((((((.((((......))))))))))).........)))))))..))))..)))))))))...)))))))))))))))).)).)))..))))))..))).)).))))))))).)))))))))))))))).

Structure

-         gag       -         g  u   aa      ga   u  a           A     ---         -U    aag       -uagagaau       g    cu 
 aaauacuuu   augaauu ccauuguuu ga aau  uuugaa  auu uc aaaugaUGGAA UUUAU   GAAGUAUUU  guuc   uuaaaau         uucaaau acac  a
 |||||||||   ||||||| ||||||||| || |||  ||||||  ||| || ||||||||||| |||||   |||||||||  ||||   |||||||         ||||||| ||||   
 uuuaugaag   uauuuaa gguaguaaa cu uua  aaGUUU  UAA AG UUUGUUACcuu aagua   uuucauaaa  uaag   aguuuug         agguuug ugug  a
u         ---       a         a  u   ag      AA   U  G           -     gaa         cu    -gg       uaaguaagu       -    aa 

Annotation confidence Low

Genome context

chr1: 25975055-25975287 [-]

Mature mtr-miR2676a-5p

• Accession: MIMAT0055006
• Description: Medicago truncatula mtr-miR2676a-5p mature miRNA
• Sequence: 59 - UGGAAAUUUAUGAAGUAUUUU - 79
• Evidence: experimental ; unknown

Mature mtr-miR2676a-3p

• Accession: MIMAT0013498
• Description: Medicago truncatula mtr-miR2676a-3p mature miRNA
• Sequence: 175 - CAUUGUUUGGAUAAUAAUUUG - 195
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796