miRBase entry: mtr-MIR2676d

Stem-loop mtr-MIR2676d


Accession
MI0012048
Description
Medicago truncatula mtr-MIR2676d precursor miRNA


Sequence

20951 reads, 184.0 reads per million, 111 experiments
augauuuguguUCAAUAUAGAUAUAAGGACAAuggggugauuauacacaugaucauuauuacauaaagauuucgucauaucacauaacauuuuugucacuuauguggcaacaauauauuauuagauguuuauuguuguuuuuaaauagggggaucaagaaguuaauuuuaaaaauaguuguauuaaaaguuaacaaaauugaaaauacgaggaucaaaauugaauuuaaccaaaaaaaacuaagaguguguuuggauggaggaauguuuugagggaauguaauguuuuaaggaaauucaaauacuuugaggugaauuuCAUUGUUUGGAUAAUAAUUUGaaggauuuucaa
.(((....(.(((((..((..(((..((((((((((((((((((....))))))))).((((.((((((((((.(..((..((((.((((((((.((.(((((..((((((((((.((........)).)))))))))).....))))))).)((((...(((((((((...((((....)))).)))))))))....))))...........(((((((....((((.(((((....(((...)))...))))).)))).....))))))).))))))).))))..))).))))).......)))))..))))...)))))))))..))).))..))))).)....))).

Structure
a   uuug g     UA  GA   AA         ggugauuauacacaugaucauua    -a     -------     g ca  uc    a       ------------------------------------------------------------------------------------------------------------------------ g  a     ---gu          u  uau 
 uga    u uUCAA  UA  UAU  GGACAAugg                       uuac  uaaag       auuuc u  ua  acau acauuuu                                                                                                                        u uc cuuau     ggcaacaaua au   u
 |||    | |||||  ||  |||  |||||||||                       ||||  |||||       ||||| |  ||  |||| |||||||                                                                                                                        | || |||||     |||||||||| ||    
 acu    g aaGUU  AU  AUA  UUUGUUACu                       agug  guuuc       uaaag a  au  ugua uguaagg                                                                                                                        a gg ggaua     uuguuguuau ug   a
a   uuua g     UA  -A   GG         --------------------uua    ga     auaaacu     g --  uu    a       gaguuuuguaaggagguagguuugugugagaaucaaaaaaaaccaauuuaaguuaaaacuaggagcauaaaaguuaaaacaauugaaaauuauguugauaaaaauuuuaauugaagaacu g  -     aauuu          u  uag 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mtr-miR2676d-5p

Accession MIMAT0055009
Description Medicago truncatula mtr-miR2676d-5p mature miRNA
Sequence 12 - UCAAUAUAGAUAUAAGGACAA - 32
Evidence experimental
unknown

Mature mtr-miR2676d-3p

Accession MIMAT0013501
Description Medicago truncatula mtr-miR2676d-3p mature miRNA
Sequence 319 - CAUUGUUUGGAUAAUAAUUUG - 339
Evidence experimental
454 [1]

References

  1. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796