Stem-loop mtr-MIR2676e

Accession

MI0012049

Description

Medicago truncatula mtr-MIR2676e precursor miRNA

Sequence

augauuuguguucaauauagauauaaggacaauggggugauuauacacaugaucauuauuacauaaagauuucgucauaucacauaacauuuuugucacuuauguggcaacaauauauuauuagauguuuauuguuguuuuuaaauagggggaucaagaaguuaauuuuaaaaauaguuguauuaaaaguuaacaaaauugaaaauacgaggaucaaaauugaauuuaaccaaaaaaaacuaagaguguguuuggauggaggaauguuuugagggaauguaauguuuuaaggaaauucaaauacuuugaggugaauuuCAUUGUUUGGAUAAUAAUUUGaaggauuuucaa
.(((....(.(((((..((..(((..((((((((((((((((((....))))))))).((((.((((((((((.(..((..((((.((((((((.((.(((((..((((((((((.((........)).)))))))))).....))))))).)((((...(((((((((...((((....)))).)))))))))....))))...........(((((((....((((.(((((....(((...)))...))))).)))).....))))))).))))))).))))..))).))))).......)))))..))))...)))))))))..))).))..))))).)....))).

Structure

a   uuug g     ua  ga   aa         ggugauuauacacaugaucauua    -a     -------     g ca  uc    a       ------------------------------------------------------------------------------------------------------------------------ g  a     ---gu          u  uau 
 uga    u uucaa  ua  uau  ggacaaugg                       uuac  uaaag       auuuc u  ua  acau acauuuu                                                                                                                        u uc cuuau     ggcaacaaua au   u
 |||    | |||||  ||  |||  |||||||||                       ||||  |||||       ||||| |  ||  |||| |||||||                                                                                                                        | || |||||     |||||||||| ||    
 acu    g aaGUU  AU  AUA  UUUGUUACu                       agug  guuuc       uaaag a  au  ugua uguaagg                                                                                                                        a gg ggaua     uuguuguuau ug   a
a   uuua g     UA  -A   GG         --------------------uua    ga     auaaacu     g --  uu    a       gaguuuuguaaggagguagguuugugugagaaucaaaaaaaaccaauuuaaguuaaaacuaggagcauaaaaguuaaaacaauugaaaauuauguugauaaaaauuuuaauugaagaacu g  -     aauuu          u  uag 

Annotation confidence Not enough data

Genome context

Unknown

Mature mtr-miR2676e

• Accession: MIMAT0013502
• Description: Medicago truncatula mtr-miR2676e mature miRNA
• Sequence: 319 - CAUUGUUUGGAUAAUAAUUUG - 339
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796