Stem-loop mtr-MIR2679b

Accession

MI0012055

Description

Medicago truncatula mtr-MIR2679b precursor miRNA

Sequence

70183 reads, 210.0 reads per million, 111 experiments

auggcgguccgaaacccauaCUUUUCACUUUCGAACGGGUGaguguacuaucacuuuggaagacgucuauaugUUACUCGGCUUACCUUUUGGAgguucaauuguuacggcuccuccaa
.(((.((.(((.(((...........(((((((((.((((((((.......((...((((.....))))..)).......)))))))))))))))))......))).)))..)).))).

Structure

a   c  -u   a   ccauaCUUUUC         C        guacuau  cuu    a 
 ugg gg  ccg aac           ACUUUCGAA GGGUGagu       ca   ugga g
 ||| ||  ||| |||           ||||||||| ||||||||       ||   |||| a
 acc cc  ggc uug           uggAGGUUU UCCAUUCG       gu   aucu c
a   u  uc   a   -----uuaacu         -        GCUCAUU  -au    g 

Annotation confidence Low

Genome context

chr4: 16967159-16967277 [-]

Mature mtr-miR2679b-5p

• Accession: MIMAT0013508
• Description: Medicago truncatula mtr-miR2679b-5p mature miRNA
• Sequence: 21 - CUUUUCACUUUCGAACGGGUG - 41
• Evidence: experimental ; 454 [1]

Mature mtr-miR2679b-3p

• Accession: MIMAT0055015
• Description: Medicago truncatula mtr-miR2679b-3p mature miRNA
• Sequence: 74 - UUACUCGGCUUACCUUUUGGA - 94
• Evidence: experimental ; unknown

References

1. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796