miRBase entry: bmo-mir-2738

Stem-loop bmo-mir-2738


Accession
MI0012187
Description
Bombyx mori bmo-mir-2738 precursor miRNA


Sequence

21669 reads, 491.0 reads per million, 34 experiments
auucucugauCUAAAUGAUGAAUGUUCUUUaccauuaaaagacugauaugaauauugaagaucuUUUAGAACGGCCAUCUGAUGAaucauaaaaacuaaauuugggaaua
((((((((((......((((..((((((........((((((((..............)).))))))))))))..))))......))))..............)))))).

Structure
-      --------------    CUAAAU    AA      UUaccauu      -  gauaug 
 auucuc              ugau      GAUG  UGUUCU        aaaaga cu      a
 ||||||              ||||      ||||  ||||||        |||||| ||       
 uaaggg              acua      CUAC  GCAAGA        UUUucu ga      a
a      uuuaaaucaaaaau    AGUAGU    CG      --------      a  aguuau 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
dbj|BSVE01000019.1|: 13072598-13072707 [-]

Database links

Mature bmo-miR-2738-5p

Accession MIMAT0053141
Description Bombyx mori bmo-miR-2738-5p mature miRNA
Sequence 11 - CUAAAUGAUGAAUGUUCUUU - 30
Evidence experimental
cloned [1], RT-PCR [1]

Mature bmo-miR-2738-3p

Accession MIMAT0012616
Description Bombyx mori bmo-miR-2738-3p mature miRNA
Sequence 65 - UUUAGAACGGCCAUCUGAUGA - 85
Evidence experimental
cloned [1], RT-PCR [1]
Database links

References

  1. PubMed ID: 19699294
    A discovery of novel microRNAs in the silkworm (Bombyx mori) genome
    "Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J"
    "Genomics (2009) 94:438-444