Stem-loop bmo-mir-9c

Accession

MI0012193

Description

Bombyx mori bmo-mir-9c precursor miRNA

Literature search

8 open access papers mention bmo-mir-9c
(21 sentences)

Sequence

3510794 reads, 81873.0 reads per million, 34 experiments

cagcgcgccgagggucgcgggccgucUCUUUGGUAUCCUAGCUGUAGGcgugcgcggcccUAAAGUUAUGGUACCGAAGUUAcggcucgugacguaucagucgacguc
..((((((.((..((((((((((((..((((((((((.(((((.((((.((.....)))))).))))).))))))))))..))))))))))))...)).).)).))).

Structure

ca   -  - c  -gg            cU          C     G    c  g 
  gcg cg c ga   gucgcgggccgu  CUUUGGUAUC UAGCU UAGG gu c
  ||| || | ||   ||||||||||||  |||||||||| ||||| |||| || g
  ugc gc g cu   cagugcucggcA  GAAGCCAUGG AUUGA AUcc cg c
-c   a  u a  aug            UU          U     A    -  g 

Annotation confidence High

Genome context

dbj|BSVE01000012.1|: 17545163-17545270 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from bmo-mir-9c

Mature bmo-miR-9c-5p

• Accession: MIMAT0015302
• Description: Bombyx mori bmo-miR-9c-5p mature miRNA
• Sequence: 27 - UCUUUGGUAUCCUAGCUGUAGG - 48
• Evidence: experimental ; Illumina [2]

Mature bmo-miR-9c-3p

• Accession: MIMAT0012621
• Description: Bombyx mori bmo-miR-9c-3p mature miRNA
• Sequence: 61 - UAAAGUUAUGGUACCGAAGUUA - 82
• Evidence: experimental ; cloned [1], RT-PCR [1], Illumina [2]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


2. PubMed ID: 19699294
   A discovery of novel microRNAs in the silkworm (Bombyx mori) genome
   "Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J"
   "Genomics (2009) 94:438-444