Stem-loop bmo-mir-2745

Accession

MI0012196

Description

Bombyx mori bmo-mir-2745 precursor miRNA

Sequence

172797 reads, 3010.0 reads per million, 34 experiments

agugccguugaUGGCCCGAAAUUCCGAAUUUUAGcuuuauuaaugcUAAAUUCGGUCUUUCGGGCauaucaaaggcacc
.(((((.((((((((((((((..((((((((.(((.........)))))))))))..)))))))).)))))).))))).

Structure

a     g      -        UU        U   uuu 
 gugcc uugaUG GCCCGAAA  CCGAAUUU AGc   a
 ||||| |||||| ||||||||  |||||||| |||   u
 cacgg aacuau CGGGCUUU  GGCUUAAA Ucg   u
c     a      a        CU        -   uaa 

Annotation confidence Medium

Genome context

dbj|BSVE01000001.1|: 2547711-2547789 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-2745

Mature bmo-miR-2745-5p

• Accession: MIMAT0053146
• Description: Bombyx mori bmo-miR-2745-5p mature miRNA
• Sequence: 12 - UGGCCCGAAAUUCCGAAUUUUAG - 34
• Evidence: experimental ; cloned [1], RT-PCR [1], SOLID [2]

Mature bmo-miR-2745-3p

• Accession: MIMAT0012624
• Description: Bombyx mori bmo-miR-2745-3p mature miRNA
• Sequence: 47 - UAAAUUCGGUCUUUCGGGC - 65
• Evidence: experimental ; cloned [1], RT-PCR [1], SOLID [2]

References

1. PubMed ID: 19699294
   A discovery of novel microRNAs in the silkworm (Bombyx mori) genome
   "Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J"
   "Genomics (2009) 94:438-444


2. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415