miRBase entry: bmo-mir-2745

Stem-loop bmo-mir-2745


Accession
MI0012196
Description
Bombyx mori bmo-mir-2745 precursor miRNA


Sequence

6602 reads, 1200 reads per million, 3 experiments
agugccguugauggcccgaaauuccgaauuuuagcuuuauuaaugcUAAAUUCGGUCUUUCGGGCauaucaaaggcacc
.(((((.((((((((((((((..((((((((.(((.........)))))))))))..)))))))).)))))).))))).

Structure
a     g      -        uu        u   uuu 
 gugcc uugaug gcccgaaa  ccgaauuu agc   a
 ||||| |||||| ||||||||  |||||||| |||   u
 cacgg aacuau CGGGCUUU  GGCUUAAA Ucg   u
c     a      a        CU        -   uaa 


Annotation confidence Not enough data
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Genome context
NW_004582030.1: 2421486-2421564 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-2745
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-2745

Accession MIMAT0012624
Description Bombyx mori bmo-miR-2745 mature miRNA
Sequence 47 - UAAAUUCGGUCUUUCGGGC - 65
Evidence experimental
cloned [1], RT-PCR [1], SOLID [2]
Database links

References

  1. PubMed ID: 19699294
    A discovery of novel microRNAs in the silkworm (Bombyx mori) genome
    "Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J"
    "Genomics (2009) 94:438-444

  2. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415