Stem-loop bmo-mir-989a

Accession

MI0012205

Description

Bombyx mori bmo-mir-989a precursor miRNA

Literature search

4 open access papers mention bmo-mir-989a
(13 sentences)

Sequence

4631685 reads, 42113.0 reads per million, 33 experiments

gguucaggguugaaaugGCCAUUACCUCACAGUCACGUggucaugaugguacaacGUGUGAUGUGACGUAGUGGAAgucucgaccuggaua
.(((((((.((((.((..(((((((.(((((..((((((..(......)..).)))))...))))).)))))))..)).))))))))))).

Structure

g       g    a  gG       C     -GU     - gu au 
 guucagg uuga au  CCAUUAC UCACA   CACGU g  c  g
 ||||||| |||| ||  ||||||| |||||   ||||| |  |   
 uaggucc agcu ug  GGUGAUG AGUGU   GUGca c  g  a
a       -    c  AA       C     AGU     a au gu 

Annotation confidence High

Genome context

dbj|BSVE01000013.1|: 2926720-2926810 [+]

Mature bmo-miR-989a-5p

• Accession: MIMAT0053150
• Description: Bombyx mori bmo-miR-989a-5p mature miRNA
• Sequence: 18 - GCCAUUACCUCACAGUCACGU - 38
• Evidence: experimental ; cloned [1], Illumina [2], RTPCR [3]

Mature bmo-miR-989a-3p

• Accession: MIMAT0012633
• Description: Bombyx mori bmo-miR-989a-3p mature miRNA
• Sequence: 56 - GUGUGAUGUGACGUAGUGGAA - 76
• Evidence: experimental ; cloned [1], Illumina [2], RTPCR [3]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


2. PubMed ID: 19699294
   A discovery of novel microRNAs in the silkworm (Bombyx mori) genome
   "Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J"
   "Genomics (2009) 94:438-444


3. PubMed ID: 19823945
   Computational identification and characteristics of novel microRNAs from the silkworm (Bombyx mori L.)
   "Huang Y, Zou Q, Tang SM, Wang LG, Shen XJ"
   "Mol Biol Rep (2010) 37:3171-3176