Stem-loop dpu-mir-2-1

Accession

MI0012238

Description

Daphnia pulex dpu-mir-2-1 precursor miRNA

Gene family

MIPF0000049; mir-2

Literature search

1 open access papers mention dpu-mir-2-1
(6 sentences)

Sequence

cuacuacgugccgcucgcaaaguggcugucaugugucccaauuucaaguuuagcguuucaUAUCACAGCCAGCUUUGAUGAGCgggacguuuuguggccuu
((((.((((.(((((((((((((((((((.(((((.......................))))).))))))).))))).))))))).))))...))))....

Structure

----    --u    g       -     -       c     ucccaauuuc 
    cuac   acgu ccgcucg caaag uggcugu augug          a
    ||||   |||| ||||||| ||||| ||||||| |||||          a
    ggug   ugca ggCGAGU GUUUC ACCGACA UAUac          g
uucc    uuu    g       A     G       C     uuugcgauuu 

Annotation confidence Not enough data

Genome context

GL732602.1: 240851-240951 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dpu-mir-2-1

Mature dpu-miR-2

• Accession: MIMAT0012657
• Description: Daphnia pulex dpu-miR-2 mature miRNA
• Sequence: 61 - UAUCACAGCCAGCUUUGAUGAGC - 83
• Evidence: not_experimental

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68