Stem-loop dpu-mir-71

Accession

MI0012248

Description

Daphnia pulex dpu-mir-71 precursor miRNA

Literature search

1 open access papers mention dpu-mir-71
(2 sentences)

Sequence

gcguugugaaaggcaucggccUGAAAGACAUGGGUAGUGAGAUGuuggccugguaguuccucaccucucacuacuuugucguucaugucgugcacuuuucc
.......((((((((.((((.((((.((((.(((((((((((....((...((.....))...))))))))))))))))).)))).))))))).)))))..

Structure

gcguugu     -   u    c    A    U           UGuu  ccu  u 
       gaaag gca cggc UGAA GACA GGGUAGUGAGA    gg   gg a
       ||||| ||| |||| |||| |||| |||||||||||    ||   || g
       uuuuc cgu gcug acuu cugu uucaucacucu    cc   cc u
-----cc     a   -    u    g    -           ----  acu  u 

Annotation confidence Not enough data

Genome context

GL732602.1: 240409-240509 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dpu-mir-71

Mature dpu-miR-71

• Accession: MIMAT0012667
• Description: Daphnia pulex dpu-miR-71 mature miRNA
• Sequence: 22 - UGAAAGACAUGGGUAGUGAGAUG - 44
• Evidence: not_experimental

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68