Stem-loop isc-mir-252b

Accession

MI0012271

Description

Ixodes scapularis isc-mir-252b precursor miRNA

Literature search

2 open access papers mention isc-mir-252b
(4 sentences)

Sequence

cauguguguuuuaaguccuUUAAGUAGUAGUGCCGCAGGUAagggcuuggcacugguaccugcacacaacugcugacugaugaaauccacugaaacgcaac
....(((((((((((((.....((((((.(((..(((((((.((((...)).))..))))))).))).))))))))))............)))))))))..

Structure

caug         ------------    cuUUA      A   CC       -a  -  u 
    uguguuuua            aguc     AGUAGU GUG  GCAGGUA  gg gc  
    |||||||||            ||||     |||||| |||  |||||||  || || u
    acgcaaagu            ucag     ucguca cac  cguccau  uc cg  
--ca         caccuaaaguag    -----      a   -a       gg  a  g 

Annotation confidence Not enough data

Genome context

ref|NW_024609884.1|: 42599627-42599723 [+]

Mature isc-miR-252b-5p

• Accession: MIMAT0012691
• Description: Ixodes scapularis isc-miR-252b-5p mature miRNA
• Sequence: 20 - UUAAGUAGUAGUGCCGCAGGUA - 41
• Evidence: not_experimental

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68