Stem-loop isc-mir-279

Accession

MI0012274

Description

Ixodes scapularis isc-mir-279 precursor miRNA

Literature search

2 open access papers mention isc-mir-279
(6 sentences)

Sequence

ccuaucguugcuauugaugacugugccucuaguccaugugaaucuagcucaUGACUAGAUCCACACUCAUCCAuagaagcggaacuuugucg
.....((((.((((.(((((.((((..(((((((.(((.(.......).))))))))))..)))).))))).)))).))))...........

Structure

------ccuau    g    u     c    cc       c   u aa 
           cguu cuau gauga ugug  ucuaguc aug g  u
           |||| |||| ||||| ||||  ||||||| ||| |  c
           gcga gauA CUACU ACAC  AGAUCAG Uac c  u
gcuguuucaag    a    C     C    CU       -   u ga 

Annotation confidence Not enough data

Genome context

ref|NW_024609882.1|: 21276930-21277017 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from isc-mir-279

Mature isc-miR-279-3p

• Accession: MIMAT0012694
• Description: Ixodes scapularis isc-miR-279-3p mature miRNA
• Sequence: 52 - UGACUAGAUCCACACUCAUCCA - 73
• Evidence: not_experimental

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68