Stem-loop isc-mir-2a

Accession

MI0012276

Description

Ixodes scapularis isc-mir-2a precursor miRNA

Literature search

2 open access papers mention isc-mir-2a
(4 sentences)

Sequence

uuucguagacgucccaccucuguucgucaaaguggcucugaugugugucucuuuuuuucaUAUCACAGCCAGCUUUGAUGAGCgguggugagucuccuacu
....((((..(.(.((((.((((((((((((((((((.(((((((.............))))))).))))).))))))))))))).)))).).)..)))).

Structure

uuuc    ac u c    u             -     c       ugucu 
    guag  g c cacc cuguucgucaaag uggcu ugaugug     c
    ||||  | | |||| ||||||||||||| ||||| |||||||     u
    cauc  c g gugg ggCGAGUAGUUUC ACCGA ACUAUac     u
---u    cu u a    u             G     C       uuuuu 

Annotation confidence Not enough data

Genome context

ref|NW_024609884.1|: 3130715-3130815 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from isc-mir-2a

Mature isc-miR-2a-3p

• Accession: MIMAT0012696
• Description: Ixodes scapularis isc-miR-2a-3p mature miRNA
• Sequence: 61 - UAUCACAGCCAGCUUUGAUGAGC - 83
• Evidence: not_experimental

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68