Stem-loop isc-mir-79

Accession

MI0012285

Description

Ixodes scapularis isc-mir-79 precursor miRNA

Literature search

1 open access papers mention isc-mir-79
(7 sentences)

Sequence

agaggaugaaggcgcugauauuuucuuugguuaucuagcuguaugagugauauuaacaucAUAAAGCUAGGUUACCAAAGUUAacagcacugccguaaugc
...(.((...(((((((...((..(((((((.((((((((.(((((((.......)).))))).)))))))).)))))))..))))))...)))...)).)

Structure

aga g  gaa   ---    aua  uu       u        g     -  ga 
   g au   ggc   gcug   uu  cuuuggu aucuagcu uauga gu  u
   | ||   |||   ||||   ||  ||||||| |||||||| ||||| ||  a
   c ua   ccg   cgac   aA  GAAACCA UGGAUCGA AUAcu ca  u
--- g  aug   uca    ---  UU       U        A     a  au 

Annotation confidence Not enough data

Genome context

DS885551: 436490-436590 [+]

Mature isc-miR-79

• Accession: MIMAT0012705
• Description: Ixodes scapularis isc-miR-79 mature miRNA
• Sequence: 61 - AUAAAGCUAGGUUACCAAAGUUA - 83
• Evidence: not_experimental

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68