Stem-loop bmo-mir-100

Accession

MI0012291

Description

Bombyx mori bmo-mir-100 precursor miRNA

Literature search

9 open access papers mention bmo-mir-100
(17 sentences)

Sequence

87058 reads, 16762 reads per million, 3 experiments

cauuaagccucuuuaacuggAACCCGUAGAUCCGAACUUGUGcgcuauugucguuggggacuccguccaaucgcgcguaacgauagcgacuauucaauggcaacaauaucgauucuaaaaguugccggcaaucaaaaccaaa
................(((((((...((((..(((..((((..(((((((....(((((((...))))..((((...........)))))))..))))))).))))..)))..))))...))).))))..............

Structure

cauuaagccucuuuaa    -   CCG    UC   AC    Gc       ucgu   ---------------------    u 
                cugg AAC   UAGA  CGA  UUGU  gcuauug    ugg                     ggac  
                |||| |||   ||||  |||  ||||  |||||||    |||                     |||| c
                ggcc uug   aucu  gcu  aaca  cgguaac    auc                     ccug  
--aaaccaaaacuaac    g   aaa    ua   au    -a       --uu   agcgauagcaaugcgcgcuaa    c 

Annotation confidence Low

Genome context

NW_004582019.1: 3376172-3376313 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bmo-mir-100

Mature bmo-miR-100

• Accession: MIMAT0013596
• Description: Bombyx mori bmo-miR-100 mature miRNA
• Sequence: 21 - AACCCGUAGAUCCGAACUUGUG - 42
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148