Stem-loop bmo-mir-316

Accession

MI0012292

Description

Bombyx mori bmo-mir-316 precursor miRNA

Literature search

2 open access papers mention bmo-mir-316
(3 sentences)

Sequence

35 reads, 10 reads per million, 2 experiments

ugcauaaauuUGUCUUUUUCCGCUUUGCUGCUGauuuuuuucguacgucaACGGCAAAGUGAAAAGGUCUCCuuuaugagaa
..((((((...(.(((((((.(((((((((.((((...........)))).)))))))))))))))).)...))))))....

Structure

--ug      uuU U       C         C    uuuu 
    cauaaa   G CUUUUUC GCUUUGCUG UGau    u
    ||||||   | ||||||| ||||||||| ||||    u
    guauuu   C GGAAAAG UGAAACGGC acug    c
aaga      CCU U       -         A    caug 

Annotation confidence Not enough data

Genome context

NW_004582031.1: 2958961-2959042 [+]

Mature bmo-miR-316-5p

• Accession: MIMAT0013597
• Description: Bombyx mori bmo-miR-316-5p mature miRNA
• Sequence: 11 - UGUCUUUUUCCGCUUUGCUGCUG - 33
• Evidence: experimental ; Illumina [1], SOLID [2]

Mature bmo-miR-316-3p

• Accession: MIMAT0013598
• Description: Bombyx mori bmo-miR-316-3p mature miRNA
• Sequence: 51 - ACGGCAAAGUGAAAAGGUCUCC - 72
• Evidence: experimental ; Illumina [1], SOLID [2]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


2. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415