Stem-loop bmo-mir-11

Accession

MI0012294

Description

Bombyx mori bmo-mir-11 precursor miRNA

Literature search

1 open access papers mention bmo-mir-11
(1 sentences)

Sequence

6279 reads, 1085 reads per million, 3 experiments

guuuuguggcUAGCACUCGACAUGUGACCUGUguucgguaaucaCAUCACAGUCAGAGUUCUAGCUacacggcgcg
(((.(((((((((.(((((((.(((((..((((.........)))))))))))).)))).))))))))).)))...

Structure

---   u         C    -   A     CC    uuc 
   guu uguggcUAG ACUC GAC UGUGA  UGUg   g
   ||| ||||||||| |||| ||| |||||  ||||   g
   cgg acaUCGAUC UGAG CUG ACACU  ACac   u
gcg   c         U    A   -     --    uaa 

Annotation confidence Low

Genome context

NW_004581691.1: 1165065-1165140 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-11

Mature bmo-miR-11-5p

• Accession: MIMAT0013601
• Description: Bombyx mori bmo-miR-11-5p mature miRNA
• Sequence: 11 - UAGCACUCGACAUGUGACCUGU - 32
• Evidence: experimental ; Illumina [1], SOLID [2]

Mature bmo-miR-11-3p

• Accession: MIMAT0013602
• Description: Bombyx mori bmo-miR-11-3p mature miRNA
• Sequence: 45 - CAUCACAGUCAGAGUUCUAGCU - 66
• Evidence: experimental ; Illumina [1], SOLID [2]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


2. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415