Stem-loop bmo-mir-998

Accession

MI0012295

Description

Bombyx mori bmo-mir-998 precursor miRNA

Literature search

1 open access papers mention bmo-mir-998
(9 sentences)

Sequence

50504 reads, 758.0 reads per million, 34 experiments

cucggucgcgAGCUGCCUCCCGUGCGGCUGCAgugcucgcgugUAGCACCAUGGGAUUCAGCUcacggccgcu
..((((((.((((((..(((((((..((((((((....)).))))))..)))))))..)))))).))))))..

Structure

cu      c      CC       CG      -  g 
  cggucg gAGCUG  UCCCGUG  GCUGCA gu c
  |||||| ||||||  |||||||  |||||| ||  
  gccggc cUCGAC  AGGGUAC  CGAUgu cg u
uc      a      UU       CA      g  c 

Annotation confidence High

Genome context

dbj|BSVE01000015.1|: 13385770-13385842 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-998

Mature bmo-miR-998-5p

• Accession: MIMAT0053151
• Description: Bombyx mori bmo-miR-998-5p mature miRNA
• Sequence: 11 - AGCUGCCUCCCGUGCGGCUGCA - 32
• Evidence: experimental ; Illumina [1]

Mature bmo-miR-998-3p

• Accession: MIMAT0013603
• Description: Bombyx mori bmo-miR-998-3p mature miRNA
• Sequence: 44 - UAGCACCAUGGGAUUCAGCU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148