Stem-loop bmo-mir-279b

Accession

MI0012298

Description

Bombyx mori bmo-mir-279b precursor miRNA

Literature search

8 open access papers mention bmo-mir-279b
(13 sentences)

Sequence

29954 reads, 5221 reads per million, 3 experiments

uuuguaguuaAUGGGUAUAGGUCUAGUAUcaccgggcugauucugUGACUAGAUCUACACUCAUUGAgugcuuaugg
...(((.(((((((((.(((((((((..((((.((......)).))))))))))))).))))))))).)))......

Structure

---uuu   g         A         UA    c  gc 
      gua uuaAUGGGU UAGGUCUAG  Ucac gg  u
      ||| ||||||||| |||||||||  |||| ||   
      cgu AGUUACUCA AUCUAGAUC  AGUg cu  g
gguauu   g         C         --    u  ua 

Annotation confidence High

Genome context

NW_004581681.1: 2936576-2936652 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-279b

Mature bmo-miR-279b-5p

• Accession: MIMAT0013608
• Description: Bombyx mori bmo-miR-279b-5p mature miRNA
• Sequence: 11 - AUGGGUAUAGGUCUAGUAU - 29
• Evidence: experimental ; Illumina [1]

Mature bmo-miR-279b-3p

• Accession: MIMAT0013609
• Description: Bombyx mori bmo-miR-279b-3p mature miRNA
• Sequence: 46 - UGACUAGAUCUACACUCAUUGA - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148