Stem-loop bmo-mir-279c

Accession

MI0012299

Description

Bombyx mori bmo-mir-279c precursor miRNA

Literature search

9 open access papers mention bmo-mir-279c
(14 sentences)

Sequence

60535 reads, 11385 reads per million, 3 experiments

ugauauuuguGGGCGAGUUUGCUUCUGGUUCAuguuuuauauugaucaUGACUAGAUCCAUACUCGUCUGcagccaucaa
((((..((((((((((((.((..((((((.((((.((......)).))))))))))..)).))))))))))))..)))).

Structure

-    au            U  CU      U    u  ua 
 ugau  uuguGGGCGAGU UG  UCUGGU CAug uu  u
 ||||  |||||||||||| ||  |||||| |||| ||   
 acua  gacGUCUGCUCA AC  AGAUCA GUac ag  a
a    cc            U  CU      -    u  uu 

Annotation confidence Not enough data

Genome context

NW_004581681.1: 2936836-2936915 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-279c

Mature bmo-miR-279c-5p

• Accession: MIMAT0013610
• Description: Bombyx mori bmo-miR-279c-5p mature miRNA
• Sequence: 11 - GGGCGAGUUUGCUUCUGGUUCA - 32
• Evidence: experimental ; Illumina [1]

Mature bmo-miR-279c-3p

• Accession: MIMAT0013611
• Description: Bombyx mori bmo-miR-279c-3p mature miRNA
• Sequence: 49 - UGACUAGAUCCAUACUCGUCUG - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148