Stem-loop bmo-mir-2733e-2

Accession

MI0012303

Description

Bombyx mori bmo-mir-2733e-2 precursor miRNA

Literature search

2 open access papers mention bmo-mir-2733e-2
(5 sentences)

Sequence

11 reads, 4 reads per million, 1 experiments

uuugcuggacugucuauaaugucuuucaacaauagcuauuacuucuccagaagacauucacauucugUCACUGGGAAUGUAAUAGCUAUuuccaaaauu
.(((..((((..........))))..))).(((((((((((((((.((((..((((.........)))).))))))).)))))))))))).........

Structure

uuugcuggacugucuauaaugucuuucaac            -   u    aa    uuc 
                              aauagcuauuac uuc ccag  gaca   a
                              |||||||||||| ||| ||||  ||||   c
                              uUAUCGAUAAUG AAG GGUC  CUgu   a
---------------------uuaaaaccu            U   -    -A    cuu 

Annotation confidence Not enough data

Genome context

NW_004581684.1: 342566-342664 [-]

Clustered miRNAs

12 other miRNAs are < 10 kb from bmo-mir-2733e-2

Mature bmo-miR-2733e

• Accession: MIMAT0013617
• Description: Bombyx mori bmo-miR-2733e mature miRNA
• Sequence: 68 - UCACUGGGAAUGUAAUAGCUAU - 89
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


2. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415