Stem-loop bmo-mir-2733e-1

Accession

MI0012304

Description

Bombyx mori bmo-mir-2733e-1 precursor miRNA

Literature search

2 open access papers mention bmo-mir-2733e-1
(10 sentences)

Sequence

11 reads, 4 reads per million, 1 experiments

acugucuacaacaaugucucucaacaauaguuaucacuuccucagucgacauguuuucacauucugUCACUGGGAAUGUAAUAGCUAUucuggauaga
.(((((((.................(((((((((.((((((.((((.(((((((....)))...)))))))))))).)).))))))))).))))))).

Structure

a       caacaaugucucucaac         c  -    u    c    ---   u 
 cugucua                 aauaguuau ac uucc cagu gaca   ugu u
 |||||||                 ||||||||| || |||| |||| ||||   |||  
 gauaggu                 uUAUCGAUA UG AAGG GUCA CUgu   aca u
a       ----------------c         A  U    -    -    cuu   c 

Annotation confidence Not enough data

Genome context

NW_004581684.1: 342896-342993 [-]

Clustered miRNAs

12 other miRNAs are < 10 kb from bmo-mir-2733e-1

Mature bmo-miR-2733e

• Accession: MIMAT0013617
• Description: Bombyx mori bmo-miR-2733e mature miRNA
• Sequence: 67 - UCACUGGGAAUGUAAUAGCUAU - 88
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


2. PubMed ID: 20089182
   Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
   Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R
   BMC Genomics (2010) 11:52