miRBase entry: bmo-mir-2733e-1

Stem-loop bmo-mir-2733e-1


Accession
MI0012304
Description
Bombyx mori bmo-mir-2733e-1 precursor miRNA
Gene family
MIPF0000766; mir-2733

Literature search
2 open access papers mention bmo-mir-2733e-1
(10 sentences)

Sequence

11 reads, 4 reads per million, 1 experiments
acugucuacaacaaugucucucaacaauaguuaucacuuccucagucgacauguuuucacauucugUCACUGGGAAUGUAAUAGCUAUucuggauaga
.(((((((.................(((((((((.((((((.((((.(((((((....)))...)))))))))))).)).))))))))).))))))).

Structure
a       caacaaugucucucaac         c  -    u    c    ---   u 
 cugucua                 aauaguuau ac uucc cagu gaca   ugu u
 |||||||                 ||||||||| || |||| |||| ||||   |||  
 gauaggu                 uUAUCGAUA UG AAGG GUCA CUgu   aca u
a       ----------------c         A  U    -    -    cuu   c 


Annotation confidence Not enough data
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Genome context
NW_004581684.1: 342896-342993 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from bmo-mir-2733e-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-2733e

Accession MIMAT0013617
Description Bombyx mori bmo-miR-2733e mature miRNA
Sequence 67 - UCACUGGGAAUGUAAUAGCUAU - 88
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  2. PubMed ID: 20089182
    Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
    Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R
    BMC Genomics (2010) 11:52